INSTALLING THE TABLET VIEWER ON WINDOWS To install the Tablet viewer on your computer, follow these steps: 1. When the installation is complete, BWA-MEM, GSNAP, Maq, Maqview, MUSCLE, and Velvet are ready for use in Sequencher. A new window appears which shows the progress of the installer. Accept the installation defaults including the license agreement terms. Double-click on ExternalToolsInstaller.exe. It will contain ExternalToolsInstaller.exe, Tablet, src, links, and ClustalW2 folders. Extract/unzip the archive and open the installer folder. Download the External Tools Installer zip archive from the Gene Codes website at 2. That location is Programs Files/Gene Codes/Sequencher External Tools. Quick and Easy Set Up for NGS Aligners and Assemblers INSTALLING EXTERNAL APPLICATIONS ON WINDOWS The Windows installer will place BWA-MEM, GSNAP, Maq, Maqview, MUSCLE, and Velvet and their related files where they need to be. The Tablet viewer is a separate installer but only takes moments to install. The instructions which follow show you how to use the all-in-one installers which will place almost everything you need to run these algorithms on your computer. To take full advantage of these tools, you will also need to install Tablet-a third-party graphical viewer. We have built native binaries for Windows, so that there is no longer any need to have Cygwin, a Unix emulation environment, installed in order to run the alignment tools. Mac OS X is a Unix-based operating system. The BWA-MEM, GSNAP, Maq, MUSCLE, and Velvet algorithms were written to run on Unix-based systems. The MUSCLE external algorithm, while not an NGS algorithm, has also been added to Sequencher. These algorithms, BWA-MEM, GSNAP, Maq, and Velvet, join Clustal (the very first external algorithm to be added to Sequencher). Introduction With the advent of Next-Generation sequencing, several new external alignment algorithms have been integrated into Sequencher to align the large quantity of data produced by Next-Generation sequencing machines. 6 Preparing a Known SNPs Data File For GSNAP. 6 Data File Requirements for Multiplex Identifier (MID) Files For Use with BWA-MEM, GSNAP, and Velvet. 5 Preparing Your Data for Sequence Alignment. 4 Installing the Tablet Viewer on Mac OS X. 3 Installing External Applications on Mac OS X. 3 Installing the Tablet Viewer on Windows. 3 Installing External Applications on Windows. ![]() Installing External Tools for Sequencher Quick and Easy Set Up for NGS Aligners and Assemblers.
0 Comments
Leave a Reply. |
AuthorWrite something about yourself. No need to be fancy, just an overview. ArchivesCategories |